J3_6TPQ_014

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAUAG*CGC*GACG

Length

13 nucleotides

Bulged bases

6TPQ|1|V|G|10, 6TPQ|1|V|U|12, 6TPQ|1|V|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TPQ|1|V|C|9
6TPQ|1|V|G|10
6TPQ|1|V|A|11
6TPQ|1|V|U|12
6TPQ|1|V|A|13
6TPQ|1|V|G|14
*
6TPQ|1|V|C|66
6TPQ|1|V|G|67
6TPQ|1|V|C|68
*
6TPQ|1|V|G|104
6TPQ|1|V|A|105
6TPQ|1|V|C|106
6TPQ|1|V|G|107

Current chains

Chain V

pre-5S rRNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain o

50S ribosomal protein L27