J3_6TPQ_019
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6TPQ|1|U|U|2417, 6TPQ|1|U|A|2453
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_019 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1441
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6TPQ|1|U|G|2309
6TPQ|1|U|C|2310
6TPQ|1|U|C|2311
*
6TPQ|1|U|G|2411
6TPQ|1|U|C|2412
6TPQ|1|U|U|2413
6TPQ|1|U|U|2414
6TPQ|1|U|A|2415
6TPQ|1|U|G|2416
6TPQ|1|U|U|2417
6TPQ|1|U|G|2418
6TPQ|1|U|A|2419
6TPQ|1|U|U|2420
6TPQ|1|U|C|2421
6TPQ|1|U|C|2422
*
6TPQ|1|U|G|2448
6TPQ|1|U|C|2449
6TPQ|1|U|U|2450
6TPQ|1|U|C|2451
6TPQ|1|U|A|2452
6TPQ|1|U|A|2453
6TPQ|1|U|C|2454
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L15
- Chain o
- 50S ribosomal protein L27
- Chain q
- 50S ribosomal protein L33 1
- Chain s
- 50S ribosomal protein L35
Coloring options: