J3_6UCQ_031

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UCQ_031 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0891

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6UCQ|1|2A|C|698
6UCQ|1|2A|A|699
6UCQ|1|2A|G|700
*
6UCQ|1|2A|C|732
6UCQ|1|2A|G|733
6UCQ|1|2A|A|734
6UCQ|1|2A|A|735
6UCQ|1|2A|C|736
*
6UCQ|1|2A|G|760
6UCQ|1|2A|A|761
6UCQ|1|2A|U|762
6UCQ|1|2A|G|763

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2