J3_6UO1_003
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 6UO1|1|1A|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UO1_003 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.0763
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6UO1|1|1A|U|269
6UO1|1|1A|A|270
6UO1|1|1A|A|271
6UO1|1|1A|A|271|||A
6UO1|1|1A|C|271|||B
*
6UO1|1|1A|G|271|||V
6UO1|1|1A|G|271|||W
6UO1|1|1A|G|271|||X
6UO1|1|1A|U|271|||Y
6UO1|1|1A|C|271|||Z
6UO1|1|1A|G|272
6UO1|1|1A|U|272|||A
6UO1|1|1A|G|272|||B
*
6UO1|1|1A|C|366
6UO1|1|1A|G|370
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1I
- 50S ribosomal protein L9
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