3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
6UO1|1|1A|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6UO1_008 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0784
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

6UO1|1|1A|C|1306
6UO1|1|1A|A|1307
6UO1|1|1A|A|1308
6UO1|1|1A|G|1309
*
6UO1|1|1A|C|1605
6UO1|1|1A|G|1606
6UO1|1|1A|C|1607
6UO1|1|1A|A|1608
6UO1|1|1A|A|1609
6UO1|1|1A|A|1610
6UO1|1|1A|C|1611
*
6UO1|1|1A|G|1620
6UO1|1|1A|U|1621
6UO1|1|1A|G|1622

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34

Coloring options:


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