J3_6UO1_021

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6UO1|1|1a|A|975, 6UO1|1|1a|G|976, 6UO1|1|1a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_021 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0653

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6UO1|1|1a|U|955
6UO1|1|1a|U|956
6UO1|1|1a|U|957
6UO1|1|1a|A|958
6UO1|1|1a|A|959
6UO1|1|1a|U|960
6UO1|1|1a|U|961
6UO1|1|1a|C|962
*
6UO1|1|1a|G|973
6UO1|1|1a|A|974
6UO1|1|1a|A|975
6UO1|1|1a|G|976
6UO1|1|1a|A|977
6UO1|1|1a|A|978
6UO1|1|1a|C|979
6UO1|1|1a|C|980
6UO1|1|1a|U|981
6UO1|1|1a|U|982
6UO1|1|1a|A|983
6UO1|1|1a|C|984
*
6UO1|1|1a|G|1221
6UO1|1|1a|G|1222
6UO1|1|1a|C|1223
6UO1|1|1a|G|1224
6UO1|1|1a|A|1225

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1j

30S ribosomal protein S10

Chain 1m

30S ribosomal protein S13

Chain 1n

30S ribosomal protein S14 type Z

Chain 1s

30S ribosomal protein S19

Chain 1w

Transfer RNA; tRNA