J3_6UO1_023

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAACC*GGGUGCC*GGAGCC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_023 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.5936

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|1a|G|1002
6UO1|1|1a|G|1003
6UO1|1|1a|A|1004
6UO1|1|1a|A|1005
6UO1|1|1a|C|1006
6UO1|1|1a|C|1007
*
6UO1|1|1a|G|1022
6UO1|1|1a|G|1023
6UO1|1|1a|G|1024
6UO1|1|1a|U|1025
6UO1|1|1a|G|1026
6UO1|1|1a|C|1027
6UO1|1|1a|C|1028
*
6UO1|1|1a|G|1033
6UO1|1|1a|G|1034
6UO1|1|1a|A|1035
6UO1|1|1a|G|1036
6UO1|1|1a|C|1037
6UO1|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains