J3_6UO1_058

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCC*GCCUAGUGAACC*GAUCAAC

Length

22 nucleotides

Bulged bases

6UO1|1|1A|A|2388, 6UO1|1|1A|U|2390, 6UO1|1|1A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_058 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.0757

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6UO1|1|1A|G|2282
6UO1|1|1A|C|2283
6UO1|1|1A|C|2284
*
6UO1|1|1A|G|2384
6UO1|1|1A|C|2385
6UO1|1|1A|C|2386
6UO1|1|1A|U|2387
6UO1|1|1A|A|2388
6UO1|1|1A|G|2389
6UO1|1|1A|U|2390
6UO1|1|1A|G|2391
6UO1|1|1A|A|2392
6UO1|1|1A|A|2393
6UO1|1|1A|C|2394
6UO1|1|1A|C|2395
*
6UO1|1|1A|G|2421
6UO1|1|1A|A|2422
6UO1|1|1A|U|2423
6UO1|1|1A|C|2424
6UO1|1|1A|A|2425
6UO1|1|1A|A|2426
6UO1|1|1A|C|2427

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 11

50S ribosomal protein L28

Chain 16

50S ribosomal protein L33

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15

Chain 1y

Transfer RNA; tRNA