J3_6UO1_068
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GCCC*GGCCUAGUGAACC*GAUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 6UO1|1|2A|A|2388, 6UO1|1|2A|U|2390, 6UO1|1|2A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UO1_068 not in the Motif Atlas
- Homologous match to J3_4WF9_019
- Geometric discrepancy: 0.2
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6UO1|1|2A|G|2282
6UO1|1|2A|C|2283
6UO1|1|2A|C|2284
6UO1|1|2A|C|2285
*
6UO1|1|2A|G|2383
6UO1|1|2A|G|2384
6UO1|1|2A|C|2385
6UO1|1|2A|C|2386
6UO1|1|2A|U|2387
6UO1|1|2A|A|2388
6UO1|1|2A|G|2389
6UO1|1|2A|U|2390
6UO1|1|2A|G|2391
6UO1|1|2A|A|2392
6UO1|1|2A|A|2393
6UO1|1|2A|C|2394
6UO1|1|2A|C|2395
*
6UO1|1|2A|G|2421
6UO1|1|2A|A|2422
6UO1|1|2A|U|2423
6UO1|1|2A|C|2424
6UO1|1|2A|A|2425
6UO1|1|2A|A|2426
6UO1|1|2A|C|2427
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 20
- 50S ribosomal protein L27
- Chain 21
- 50S ribosomal protein L28
- Chain 26
- 50S ribosomal protein L33
- Chain 28
- 50S ribosomal protein L35
- Chain 2P
- 50S ribosomal protein L15
- Chain 2y
- Transfer RNA; tRNA
Coloring options: