J3_6UO1_071

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAGG*CCGAAG*CGUUAAG

Length

18 nucleotides

Bulged bases

6UO1|1|2a|U|871, 6UO1|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|2a|C|826
6UO1|1|2a|U|827
6UO1|1|2a|A|828
6UO1|1|2a|G|829
6UO1|1|2a|G|830
*
6UO1|1|2a|C|856
6UO1|1|2a|C|857
6UO1|1|2a|G|858
6UO1|1|2a|A|859
6UO1|1|2a|A|860
6UO1|1|2a|G|861
*
6UO1|1|2a|C|868
6UO1|1|2a|G|869
6UO1|1|2a|U|870
6UO1|1|2a|U|871
6UO1|1|2a|A|872
6UO1|1|2a|A|873
6UO1|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8