J3_6UZ7_031

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGACA*UGGGUGGUG*CCUUAGACG

Length

24 nucleotides

Bulged bases

6UZ7|1|2|A|1216, 6UZ7|1|2|U|1268, 6UZ7|1|2|G|1443, 6UZ7|1|2|C|1445

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UZ7|1|2|C|1215
6UZ7|1|2|A|1216
6UZ7|1|2|G|1217
6UZ7|1|2|A|1218
6UZ7|1|2|C|1219
6UZ7|1|2|A|1220
*
6UZ7|1|2|U|1261
6UZ7|1|2|G|1262
6UZ7|1|2|G|1263
6UZ7|1|2|G|1264
6UZ7|1|2|U|1265
6UZ7|1|2|G|1266
6UZ7|1|2|G|1267
6UZ7|1|2|U|1268
6UZ7|1|2|G|1269
*
6UZ7|1|2|C|1438
6UZ7|1|2|C|1439
6UZ7|1|2|U|1440
6UZ7|1|2|U|1441
6UZ7|1|2|A|1442
6UZ7|1|2|G|1443
6UZ7|1|2|A|1444
6UZ7|1|2|C|1445
6UZ7|1|2|G|1446

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain M

40S ribosomal protein S12

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a