J3_6UZ7_036
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6UZ7|1|5|U|343, 6UZ7|1|5|A|351, 6UZ7|1|8|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UZ7_036 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0911
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
6UZ7|1|5|C|340
6UZ7|1|5|G|341
6UZ7|1|5|A|342
6UZ7|1|5|U|343
6UZ7|1|5|A|344
6UZ7|1|5|G|345
6UZ7|1|5|C|346
6UZ7|1|5|G|347
6UZ7|1|5|A|348
6UZ7|1|5|A|349
6UZ7|1|5|C|350
6UZ7|1|5|A|351
6UZ7|1|5|A|352
6UZ7|1|5|G|353
6UZ7|1|5|U|354
6UZ7|1|5|A|355
6UZ7|1|5|C|356
*
6UZ7|1|5|G|363
6UZ7|1|5|G|364
6UZ7|1|5|A|365
6UZ7|1|5|A|366
6UZ7|1|5|A|367
6UZ7|1|5|G|368
*
6UZ7|1|8|C|21
6UZ7|1|8|U|22
6UZ7|1|8|U|23
6UZ7|1|8|G|24
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- KLLA0B07139p
- Chain AY
- KLLA0B05742p
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39
Coloring options: