J3_6V39_002
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AC*GAAAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 6V39|1|AN1|A|81
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_002 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1187
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V39|1|AN1|A|63
6V39|1|AN1|C|64
*
6V39|1|AN1|G|77
6V39|1|AN1|A|78
6V39|1|AN1|A|79
6V39|1|AN1|A|80
6V39|1|AN1|A|81
6V39|1|AN1|G|82
6V39|1|AN1|C|83
*
6V39|1|AN1|G|117
6V39|1|AN1|A|118
6V39|1|AN1|U|119
6V39|1|AN1|G|120
6V39|1|AN1|U|121
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain S
- 50S ribosomal protein L23
- Chain X
- 50S ribosomal protein L29
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