J3_6V39_003
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGAUCUA*UAG*CAAG
- Length
- 14 nucleotides
- Bulged bases
- 6V39|1|AN1|U|684, 6V39|1|AN1|A|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_003 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0859
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6V39|1|AN1|C|681
6V39|1|AN1|G|682
6V39|1|AN1|A|683
6V39|1|AN1|U|684
6V39|1|AN1|C|685
6V39|1|AN1|U|686
6V39|1|AN1|A|687
*
6V39|1|AN1|U|771
6V39|1|AN1|A|772
6V39|1|AN1|G|773
*
6V39|1|AN1|C|789
6V39|1|AN1|A|790
6V39|1|AN1|A|791
6V39|1|AN1|G|792
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
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