J3_6V39_004
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_004 not in the Motif Atlas
- Homologous match to J3_7RQB_005
- Geometric discrepancy: 0.0957
- The information below is about J3_7RQB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.4
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6V39|1|AN1|C|696
6V39|1|AN1|A|697
6V39|1|AN1|G|698
*
6V39|1|AN1|C|730
6V39|1|AN1|G|731
6V39|1|AN1|A|732
6V39|1|AN1|A|733
6V39|1|AN1|C|734
*
6V39|1|AN1|G|758
6V39|1|AN1|A|759
6V39|1|AN1|U|760
6V39|1|AN1|G|761
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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