J3_6V39_012

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6V39|1|AN1|A|2514, 6V39|1|AN1|U|2515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V39_012 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1348

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6V39|1|AN1|C|2513
6V39|1|AN1|A|2514
6V39|1|AN1|U|2515
6V39|1|AN1|C|2516
*
6V39|1|AN1|G|2541
6V39|1|AN1|U|2542
6V39|1|AN1|A|2543
*
6V39|1|AN1|U|2557
6V39|1|AN1|U|2558
6V39|1|AN1|U|2559
6V39|1|AN1|A|2560
6V39|1|AN1|A|2561
6V39|1|AN1|A|2562
6V39|1|AN1|G|2563

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L14