J3_6V39_015

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

ACCAUAG*CG*UCAU

Length

13 nucleotides

Bulged bases

6V39|1|B|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V39_015 not in the Motif Atlas

Homologous match to J3_7A0S_021

Geometric discrepancy: 0.5026

The information below is about J3_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47324.1

Basepair signature

cWW-F-F-tSS-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6V39|1|B|A|8
6V39|1|B|C|9
6V39|1|B|C|10
6V39|1|B|A|11
6V39|1|B|U|12
6V39|1|B|A|13
6V39|1|B|G|14
*
6V39|1|B|C|66
6V39|1|B|G|67
*
6V39|1|B|U|104
6V39|1|B|C|105
6V39|1|B|A|106
6V39|1|B|U|107

Current chains

Chain B

5s ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L18

Chain V

50S ribosomal protein L27