J3_6V39_028
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GGAAC*GAACGUAGAG*CGUAC
- Length
- 20 nucleotides
- Bulged bases
- 6V39|1|AN1|U|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_028 not in the Motif Atlas
- Homologous match to J3_5J7L_068
- Geometric discrepancy: 0.1013
- The information below is about J3_5J7L_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46299.2
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6V39|1|AN1|G|299
6V39|1|AN1|G|300
6V39|1|AN1|A|301
6V39|1|AN1|A|302
6V39|1|AN1|C|303
*
6V39|1|AN1|G|318
6V39|1|AN1|A|319
6V39|1|AN1|A|320
6V39|1|AN1|C|321
6V39|1|AN1|G|322
6V39|1|AN1|U|323
6V39|1|AN1|A|324
6V39|1|AN1|G|325
6V39|1|AN1|A|326
6V39|1|AN1|G|327
*
6V39|1|AN1|C|339
6V39|1|AN1|G|340
6V39|1|AN1|U|341
6V39|1|AN1|A|342
6V39|1|AN1|C|343
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L24
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