J3_6V39_030

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AG*UGAAAG*UGAUAGCAAGCUGUACUUGUACAGCGAAGU

Length

38 nucleotides

Bulged bases

6V39|1|AN1|U|1519, 6V39|1|AN1|C|1531, 6V39|1|AN1|U|1532, 6V39|1|AN1|U|1533, 6V39|1|AN1|C|1540, 6V39|1|AN1|G|1541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|A|1439
6V39|1|AN1|G|1440
*
6V39|1|AN1|U|1461
6V39|1|AN1|G|1462
6V39|1|AN1|A|1463
6V39|1|AN1|A|1464
6V39|1|AN1|A|1465
6V39|1|AN1|G|1466
*
6V39|1|AN1|U|1516
6V39|1|AN1|G|1517
6V39|1|AN1|A|1518
6V39|1|AN1|U|1519
6V39|1|AN1|A|1520
6V39|1|AN1|G|1521
6V39|1|AN1|C|1522
6V39|1|AN1|A|1523
6V39|1|AN1|A|1524
6V39|1|AN1|G|1525
6V39|1|AN1|C|1526
6V39|1|AN1|U|1527
6V39|1|AN1|G|1528
6V39|1|AN1|U|1529
6V39|1|AN1|A|1530
6V39|1|AN1|C|1531
6V39|1|AN1|U|1532
6V39|1|AN1|U|1533
6V39|1|AN1|G|1534
6V39|1|AN1|U|1535
6V39|1|AN1|A|1536
6V39|1|AN1|C|1537
6V39|1|AN1|A|1538
6V39|1|AN1|G|1539
6V39|1|AN1|C|1540
6V39|1|AN1|G|1541
6V39|1|AN1|A|1542
6V39|1|AN1|A|1543
6V39|1|AN1|G|1544
6V39|1|AN1|U|1545

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains