J3_6V39_033

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

6V39|1|sN1|U|50, 6V39|1|sN1|A|53, 6V39|1|sN1|U|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|sN1|G|48
6V39|1|sN1|C|49
6V39|1|sN1|U|50
6V39|1|sN1|U|51
6V39|1|sN1|A|52
6V39|1|sN1|A|53
6V39|1|sN1|C|54
*
6V39|1|sN1|G|355
6V39|1|sN1|G|356
6V39|1|sN1|G|357
6V39|1|sN1|G|358
6V39|1|sN1|A|359
6V39|1|sN1|A|360
6V39|1|sN1|U|361
6V39|1|sN1|A|362
6V39|1|sN1|U|363
6V39|1|sN1|U|364
6V39|1|sN1|G|365
*
6V39|1|sN1|C|388
6V39|1|sN1|A|389
6V39|1|sN1|G|390
6V39|1|sN1|C|391

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16