J3_6V39_039

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUUU*AUACUGC*GAGGAAGGCGG

Length

22 nucleotides

Bulged bases

6V39|1|sN1|C|1180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|sN1|U|1112
6V39|1|sN1|U|1113
6V39|1|sN1|U|1114
6V39|1|sN1|U|1115
*
6V39|1|sN1|A|1152
6V39|1|sN1|U|1153
6V39|1|sN1|A|1154
6V39|1|sN1|C|1155
6V39|1|sN1|U|1156
6V39|1|sN1|G|1157
6V39|1|sN1|C|1158
*
6V39|1|sN1|G|1172
6V39|1|sN1|A|1173
6V39|1|sN1|G|1174
6V39|1|sN1|G|1175
6V39|1|sN1|A|1176
6V39|1|sN1|A|1177
6V39|1|sN1|G|1178
6V39|1|sN1|G|1179
6V39|1|sN1|C|1180
6V39|1|sN1|G|1181
6V39|1|sN1|G|1182

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14