J3_6V39_040
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- G(4SU)AGCUCAGUUGG(H2U)UAGAGCAC*GGGGUCA*UC
- Length
- 31 nucleotides
- Bulged bases
- 6V39|1|v|U|16, 6V39|1|v|U|17, 6V39|1|v|G|18, 6V39|1|v|G|19, 6V39|1|v|H2U|20, 6V39|1|v|U|21, 6V39|1|v|U|48
- QA status
- Modified nucleotides: 4SU, H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6V39|1|v|G|7
6V39|1|v|4SU|8
6V39|1|v|A|9
6V39|1|v|G|10
6V39|1|v|C|11
6V39|1|v|U|12
6V39|1|v|C|13
6V39|1|v|A|14
6V39|1|v|G|15
6V39|1|v|U|16
6V39|1|v|U|17
6V39|1|v|G|18
6V39|1|v|G|19
6V39|1|v|H2U|20
6V39|1|v|U|21
6V39|1|v|A|22
6V39|1|v|G|23
6V39|1|v|A|24
6V39|1|v|G|25
6V39|1|v|C|26
6V39|1|v|A|27
6V39|1|v|C|28
*
6V39|1|v|G|44
6V39|1|v|G|45
6V39|1|v|G|46
6V39|1|v|G|47
6V39|1|v|U|48
6V39|1|v|C|49
6V39|1|v|A|50
*
6V39|1|v|U|66
6V39|1|v|C|67
Current chains
- Chain v
- tRNA-met
Nearby chains
- Chain AN1
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain m
- 30S ribosomal protein S13
Coloring options: