J3_6V3A_003

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAUCUA*UAG*CAAG

Length

14 nucleotides

Bulged bases

6V3A|1|AN1|U|684, 6V3A|1|AN1|A|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3A_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0775

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6V3A|1|AN1|C|681
6V3A|1|AN1|G|682
6V3A|1|AN1|A|683
6V3A|1|AN1|U|684
6V3A|1|AN1|C|685
6V3A|1|AN1|U|686
6V3A|1|AN1|A|687
*
6V3A|1|AN1|U|771
6V3A|1|AN1|A|772
6V3A|1|AN1|G|773
*
6V3A|1|AN1|C|789
6V3A|1|AN1|A|790
6V3A|1|AN1|A|791
6V3A|1|AN1|G|792

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain C

50S ribosomal protein L2