J3_6V3A_008

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3A_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1388

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6V3A|1|AN1|U|1339
6V3A|1|AN1|C|1340
6V3A|1|AN1|G|1341
6V3A|1|AN1|A|1342
6V3A|1|AN1|C|1343
6V3A|1|AN1|C|1344
*
6V3A|1|AN1|G|1377
6V3A|1|AN1|A|1378
6V3A|1|AN1|A|1379
6V3A|1|AN1|A|1380
*
6V3A|1|AN1|U|1397
6V3A|1|AN1|A|1398

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23