J3_6V3A_013

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CC*GUUGAU*AAUUG

Length

13 nucleotides

Bulged bases

6V3A|1|AN1|U|2829, 6V3A|1|AN1|A|2831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3A_013 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.2678

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6V3A|1|AN1|C|2810
6V3A|1|AN1|C|2811
*
6V3A|1|AN1|G|2827
6V3A|1|AN1|U|2828
6V3A|1|AN1|U|2829
6V3A|1|AN1|G|2830
6V3A|1|AN1|A|2831
6V3A|1|AN1|U|2832
*
6V3A|1|AN1|A|2878
6V3A|1|AN1|A|2879
6V3A|1|AN1|U|2880
6V3A|1|AN1|U|2881
6V3A|1|AN1|G|2882

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain Z

50S ribosomal protein L32