J3_6V3A_031
3D structure
- PDB id
- 6V3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUA*UCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6V3A|1|AN1|A|2384, 6V3A|1|AN1|U|2386, 6V3A|1|AN1|A|2422
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V3A_031 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0983
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6V3A|1|AN1|G|2278
6V3A|1|AN1|U|2279
6V3A|1|AN1|A|2280
*
6V3A|1|AN1|U|2380
6V3A|1|AN1|C|2381
6V3A|1|AN1|U|2382
6V3A|1|AN1|U|2383
6V3A|1|AN1|A|2384
6V3A|1|AN1|G|2385
6V3A|1|AN1|U|2386
6V3A|1|AN1|G|2387
6V3A|1|AN1|A|2388
6V3A|1|AN1|U|2389
6V3A|1|AN1|C|2390
6V3A|1|AN1|C|2391
*
6V3A|1|AN1|G|2417
6V3A|1|AN1|C|2418
6V3A|1|AN1|U|2419
6V3A|1|AN1|C|2420
6V3A|1|AN1|A|2421
6V3A|1|AN1|A|2422
6V3A|1|AN1|C|2423
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- 50S ribosomal protein L35
- Chain K
- 50S ribosomal protein L15
- Chain V
- 50S ribosomal protein L27
- Chain v
- Transfer RNA; tRNA
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