J3_6V3E_001

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3E_001 not in the Motif Atlas

Homologous match to J3_6CZR_015

Geometric discrepancy: 0.2119

The information below is about J3_6CZR_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6V3E|1|sN1|G|48
6V3E|1|sN1|C|49
*
6V3E|1|sN1|G|357
6V3E|1|sN1|G|358
6V3E|1|sN1|A|359
6V3E|1|sN1|A|360
6V3E|1|sN1|U|361
6V3E|1|sN1|A|362
6V3E|1|sN1|U|363
*
6V3E|1|sN1|A|389
6V3E|1|sN1|G|390
6V3E|1|sN1|C|391

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16