J3_6V3E_012
3D structure
- PDB id
- 6V3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6V3E|1|sN1|U|50, 6V3E|1|sN1|A|53
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V3E_012 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.1872
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6V3E|1|sN1|G|48
6V3E|1|sN1|C|49
6V3E|1|sN1|U|50
6V3E|1|sN1|U|51
6V3E|1|sN1|A|52
6V3E|1|sN1|A|53
6V3E|1|sN1|C|54
*
6V3E|1|sN1|G|355
6V3E|1|sN1|G|356
6V3E|1|sN1|G|357
6V3E|1|sN1|G|358
6V3E|1|sN1|A|359
6V3E|1|sN1|A|360
6V3E|1|sN1|U|361
6V3E|1|sN1|A|362
6V3E|1|sN1|U|363
*
6V3E|1|sN1|A|389
6V3E|1|sN1|G|390
6V3E|1|sN1|C|391
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
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