J3_6V3E_019
3D structure
- PDB id
- 6V3E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UUU*AUACUGC*GAGGAAGGCG
- Length
- 20 nucleotides
- Bulged bases
- 6V3E|1|sN1|C|1180
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V3E_019 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.2638
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6V3E|1|sN1|U|1113
6V3E|1|sN1|U|1114
6V3E|1|sN1|U|1115
*
6V3E|1|sN1|A|1152
6V3E|1|sN1|U|1153
6V3E|1|sN1|A|1154
6V3E|1|sN1|C|1155
6V3E|1|sN1|U|1156
6V3E|1|sN1|G|1157
6V3E|1|sN1|C|1158
*
6V3E|1|sN1|G|1172
6V3E|1|sN1|A|1173
6V3E|1|sN1|G|1174
6V3E|1|sN1|G|1175
6V3E|1|sN1|A|1176
6V3E|1|sN1|A|1177
6V3E|1|sN1|G|1178
6V3E|1|sN1|G|1179
6V3E|1|sN1|C|1180
6V3E|1|sN1|G|1181
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14
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