J3_6VMI_001
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 6VMI|1|A|G|1918, 6VMI|1|A|G|2002
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VMI_001 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.3525
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6VMI|1|A|C|1915
6VMI|1|A|G|1916
6VMI|1|A|A|1917
6VMI|1|A|G|1918
6VMI|1|A|C|1919
6VMI|1|A|U|1920
6VMI|1|A|A|1921
*
6VMI|1|A|U|1983
6VMI|1|A|A|1984
6VMI|1|A|G|1985
*
6VMI|1|A|C|2001
6VMI|1|A|G|2002
6VMI|1|A|A|2003
6VMI|1|A|G|2004
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
Coloring options: