J3_6VMI_009
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VMI_009 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.2958
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VMI|1|AA|A|1198
6VMI|1|AA|G|1199
6VMI|1|AA|G|1200
6VMI|1|AA|A|1201
*
6VMI|1|AA|U|1364
6VMI|1|AA|A|1365
6VMI|1|AA|C|1366
*
6VMI|1|AA|G|1421
6VMI|1|AA|G|1422
6VMI|1|AA|A|1423
6VMI|1|AA|U|1424
Current chains
- Chain AA
- 12s rRNA
Nearby chains
- Chain A6
- P-site and E-site tRNA
- Chain A7
- P-site and E-site tRNA
- Chain AF
- 28S ribosomal protein S7, mitochondrial
- Chain AG
- 28S ribosomal protein S9, mitochondrial
Coloring options: