J3_6VMI_015
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AAAAUUUAACACCCAU*AUUAAG*CAACACCCACUACCUAAAAAAUCCCAAACAUAUAACU
- Length
- 59 nucleotides
- Bulged bases
- 6VMI|1|A|A|2154, 6VMI|1|A|U|2159, 6VMI|1|A|A|2160, 6VMI|1|A|U|2222, 6VMI|1|A|A|2223, 6VMI|1|A|C|2224, 6VMI|1|A|A|2227, 6VMI|1|A|A|2228, 6VMI|1|A|U|2233, 6VMI|1|A|C|2236, 6VMI|1|A|C|2240, 6VMI|1|A|A|2243, 6VMI|1|A|U|2244
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VMI|1|A|A|2153
6VMI|1|A|A|2154
6VMI|1|A|A|2155
6VMI|1|A|A|2156
6VMI|1|A|U|2157
6VMI|1|A|U|2158
6VMI|1|A|U|2159
6VMI|1|A|A|2160
6VMI|1|A|A|2161
6VMI|1|A|C|2162
6VMI|1|A|A|2163
6VMI|1|A|C|2164
6VMI|1|A|C|2165
6VMI|1|A|C|2166
6VMI|1|A|A|2167
6VMI|1|A|U|2168
*
6VMI|1|A|A|2192
6VMI|1|A|U|2193
6VMI|1|A|U|2194
6VMI|1|A|A|2195
6VMI|1|A|A|2196
6VMI|1|A|G|2197
*
6VMI|1|A|C|2212
6VMI|1|A|A|2213
6VMI|1|A|A|2214
6VMI|1|A|C|2215
6VMI|1|A|A|2216
6VMI|1|A|C|2217
6VMI|1|A|C|2218
6VMI|1|A|C|2219
6VMI|1|A|A|2220
6VMI|1|A|C|2221
6VMI|1|A|U|2222
6VMI|1|A|A|2223
6VMI|1|A|C|2224
6VMI|1|A|C|2225
6VMI|1|A|U|2226
6VMI|1|A|A|2227
6VMI|1|A|A|2228
6VMI|1|A|A|2229
6VMI|1|A|A|2230
6VMI|1|A|A|2231
6VMI|1|A|A|2232
6VMI|1|A|U|2233
6VMI|1|A|C|2234
6VMI|1|A|C|2235
6VMI|1|A|C|2236
6VMI|1|A|A|2237
6VMI|1|A|A|2238
6VMI|1|A|A|2239
6VMI|1|A|C|2240
6VMI|1|A|A|2241
6VMI|1|A|U|2242
6VMI|1|A|A|2243
6VMI|1|A|U|2244
6VMI|1|A|A|2245
6VMI|1|A|A|2246
6VMI|1|A|C|2247
6VMI|1|A|U|2248
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain 4
- 39S ribosomal protein L36, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain J
- 39S ribosomal protein L11, mitochondrial
- Chain K
- 39S ribosomal protein L13, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain j
- cDNA FLJ76418, highly similar to Homo sapiens mitochondrial ribosomal protein L52 (MRPL52), transcript variant 1, mRNA
- Chain k
- 39S ribosomal protein L53, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: