J3_6VMI_016

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCG*CAAUUAACA*UGUC

Length

16 nucleotides

Bulged bases

6VMI|1|A|C|2344, 6VMI|1|A|U|2371, 6VMI|1|A|U|2372, 6VMI|1|A|A|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VMI|1|A|G|2343
6VMI|1|A|C|2344
6VMI|1|A|G|2345
*
6VMI|1|A|C|2368
6VMI|1|A|A|2369
6VMI|1|A|A|2370
6VMI|1|A|U|2371
6VMI|1|A|U|2372
6VMI|1|A|A|2373
6VMI|1|A|A|2374
6VMI|1|A|C|2375
6VMI|1|A|A|2376
*
6VMI|1|A|U|2420
6VMI|1|A|G|2421
6VMI|1|A|U|2422
6VMI|1|A|C|2423

Current chains

Chain A

16s rRNA

Nearby chains

Chain 9

39S ribosomal protein L41, mitochondrial

Chain U

39S ribosomal protein L23, mitochondrial

Chain Y

39S ribosomal protein L47, mitochondrial

Chain s

39S ribosomal protein S30, mitochondrial