J3_6VU3_023

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6VU3|1|a|A|2518, 6VU3|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VU3_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0573

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6VU3|1|a|C|2517
6VU3|1|a|A|2518
6VU3|1|a|U|2519
6VU3|1|a|C|2520
*
6VU3|1|a|G|2545
6VU3|1|a|U|2546
6VU3|1|a|A|2547
*
6VU3|1|a|U|2561
6VU3|1|a|U|2562
6VU3|1|a|U|2563
6VU3|1|a|A|2564
6VU3|1|a|A|2565
6VU3|1|a|A|2566
6VU3|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14