3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWL_002 not in the Motif Atlas
Homologous match to J3_5J7L_002
Geometric discrepancy: 0.1876
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6VWL|1|1|C|586
6VWL|1|1|G|587
6VWL|1|1|G|588
*
6VWL|1|1|C|651
6VWL|1|1|U|652
6VWL|1|1|U|653
6VWL|1|1|G|654
*
6VWL|1|1|C|754
6VWL|1|1|G|755

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S8
Chain k
30S ribosomal protein S12
Chain n
30S ribosomal protein S15
Chain p
30S ribosomal protein S17

Coloring options:


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