J3_6VWL_005
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- 6VWL|1|1|C|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_005 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.3411
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VWL|1|1|C|936
6VWL|1|1|A|937
6VWL|1|1|A|938
6VWL|1|1|G|939
*
6VWL|1|1|C|1344
6VWL|1|1|U|1345
6VWL|1|1|A|1346
6VWL|1|1|G|1347
6VWL|1|1|U|1348
6VWL|1|1|A|1349
6VWL|1|1|A|1350
*
6VWL|1|1|U|1372
6VWL|1|1|G|1373
6VWL|1|1|A|1374
6VWL|1|1|A|1375
6VWL|1|1|U|1376
6VWL|1|1|A|1377
6VWL|1|1|C|1378
6VWL|1|1|G|1379
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain f
- 30S ribosomal protein S7
- Chain h
- 30S ribosomal protein S9
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