3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
6VWL|1|1|U|992, 6VWL|1|1|U|1212, 6VWL|1|1|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWL_008 not in the Motif Atlas
Homologous match to J3_5J7L_007
Geometric discrepancy: 0.2462
The information below is about J3_5J7L_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6VWL|1|1|C|990
6VWL|1|1|U|991
6VWL|1|1|U|992
6VWL|1|1|G|993
*
6VWL|1|1|C|1045
6VWL|1|1|A|1046
6VWL|1|1|G|1047
*
6VWL|1|1|C|1210
6VWL|1|1|U|1211
6VWL|1|1|U|1212
6VWL|1|1|A|1213
6VWL|1|1|C|1214
6VWL|1|1|G|1215

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain 4
HIV ribosomal frameshift signal
Chain m
30S ribosomal protein S14

Coloring options:


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