J3_6VWL_008
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 6VWL|1|1|U|992, 6VWL|1|1|U|1212, 6VWL|1|1|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_008 not in the Motif Atlas
- Homologous match to J3_5J7L_007
- Geometric discrepancy: 0.2462
- The information below is about J3_5J7L_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWL|1|1|C|990
6VWL|1|1|U|991
6VWL|1|1|U|992
6VWL|1|1|G|993
*
6VWL|1|1|C|1045
6VWL|1|1|A|1046
6VWL|1|1|G|1047
*
6VWL|1|1|C|1210
6VWL|1|1|U|1211
6VWL|1|1|U|1212
6VWL|1|1|A|1213
6VWL|1|1|C|1214
6VWL|1|1|G|1215
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 4
- HIV ribosomal frameshift signal
- Chain m
- 30S ribosomal protein S14
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