3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6VWL|1|2|A|2518, 6VWL|1|2|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6VWL_023 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.2266
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6VWL|1|2|C|2517
6VWL|1|2|A|2518
6VWL|1|2|U|2519
6VWL|1|2|C|2520
*
6VWL|1|2|G|2545
6VWL|1|2|U|2546
6VWL|1|2|A|2547
*
6VWL|1|2|U|2561
6VWL|1|2|U|2562
6VWL|1|2|U|2563
6VWL|1|2|A|2564
6VWL|1|2|A|2565
6VWL|1|2|A|2566
6VWL|1|2|G|2567

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain I
50S ribosomal protein L14

Coloring options:


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