J3_6VWL_024
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CC*GAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_024 not in the Motif Atlas
- Homologous match to J3_5J7L_047
- Geometric discrepancy: 0.229
- The information below is about J3_5J7L_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30104.1
- Basepair signature
- cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6VWL|1|2|C|2789
6VWL|1|2|U|2790
6VWL|1|2|G|2791
*
6VWL|1|2|C|2805
6VWL|1|2|C|2806
*
6VWL|1|2|G|2892
6VWL|1|2|A|2893
6VWL|1|2|G|2894
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
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