J3_6VWL_026
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6VWL|1|3|G|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWL_026 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.5164
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6VWL|1|3|G|10
6VWL|1|3|C|11
6VWL|1|3|C|12
6VWL|1|3|G|13
6VWL|1|3|U|14
6VWL|1|3|A|15
6VWL|1|3|G|16
*
6VWL|1|3|C|68
6VWL|1|3|G|69
6VWL|1|3|C|70
*
6VWL|1|3|G|106
6VWL|1|3|G|107
6VWL|1|3|A|108
6VWL|1|3|A|109
6VWL|1|3|C|110
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L18
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
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