J3_6VWL_031

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VWL|1|2|U|321, 6VWL|1|2|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWL_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1522

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|G|297
6VWL|1|2|G|298
6VWL|1|2|A|299
6VWL|1|2|A|300
6VWL|1|2|G|301
*
6VWL|1|2|C|316
6VWL|1|2|G|317
6VWL|1|2|C|318
6VWL|1|2|G|319
6VWL|1|2|A|320
6VWL|1|2|U|321
6VWL|1|2|A|322
6VWL|1|2|C|323
6VWL|1|2|A|324
6VWL|1|2|G|325
*
6VWL|1|2|C|337
6VWL|1|2|G|338
6VWL|1|2|U|339
6VWL|1|2|A|340
6VWL|1|2|C|341

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain S

50S ribosomal protein L24