J3_6VWM_015

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VWM|1|2|U|686, 6VWM|1|2|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWM_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1018

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VWM|1|2|U|683
6VWM|1|2|G|684
6VWM|1|2|A|685
6VWM|1|2|U|686
6VWM|1|2|C|687
6VWM|1|2|U|688
6VWM|1|2|A|689
*
6VWM|1|2|U|773
6VWM|1|2|G|774
6VWM|1|2|G|775
*
6VWM|1|2|C|791
6VWM|1|2|A|792
6VWM|1|2|A|793
6VWM|1|2|A|794

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain AA

50S ribosomal protein L34