J3_6VWM_026
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGCAGGCGG*CUUG*CGCUCAGG
- Length
- 21 nucleotides
- Bulged bases
- 6VWM|1|1|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWM|1|1|C|580
6VWM|1|1|G|581
6VWM|1|1|C|582
6VWM|1|1|A|583
6VWM|1|1|G|584
6VWM|1|1|G|585
6VWM|1|1|C|586
6VWM|1|1|G|587
6VWM|1|1|G|588
*
6VWM|1|1|C|651
6VWM|1|1|U|652
6VWM|1|1|U|653
6VWM|1|1|G|654
*
6VWM|1|1|C|754
6VWM|1|1|G|755
6VWM|1|1|C|756
6VWM|1|1|U|757
6VWM|1|1|C|758
6VWM|1|1|A|759
6VWM|1|1|G|760
6VWM|1|1|G|761
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S8
- Chain k
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S15
- Chain p
- 30S ribosomal protein S17
Coloring options: