J3_6VWM_031
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 6VWM|1|1|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VWM_031 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1998
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWM|1|1|U|1116
6VWM|1|1|A|1117
6VWM|1|1|U|1118
*
6VWM|1|1|A|1155
6VWM|1|1|G|1156
6VWM|1|1|A|1157
6VWM|1|1|C|1158
6VWM|1|1|U|1159
6VWM|1|1|G|1160
6VWM|1|1|C|1161
*
6VWM|1|1|G|1175
6VWM|1|1|A|1176
6VWM|1|1|G|1177
6VWM|1|1|G|1178
6VWM|1|1|A|1179
6VWM|1|1|A|1180
6VWM|1|1|G|1181
6VWM|1|1|G|1182
6VWM|1|1|U|1183
6VWM|1|1|G|1184
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain a
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S9
- Chain i
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S14
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