J3_6VWM_034

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VWM|1|2|U|321, 6VWM|1|2|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VWM_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1645

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VWM|1|2|G|297
6VWM|1|2|G|298
6VWM|1|2|A|299
6VWM|1|2|A|300
6VWM|1|2|G|301
*
6VWM|1|2|C|316
6VWM|1|2|G|317
6VWM|1|2|C|318
6VWM|1|2|G|319
6VWM|1|2|A|320
6VWM|1|2|U|321
6VWM|1|2|A|322
6VWM|1|2|C|323
6VWM|1|2|A|324
6VWM|1|2|G|325
*
6VWM|1|2|C|337
6VWM|1|2|G|338
6VWM|1|2|U|339
6VWM|1|2|A|340
6VWM|1|2|C|341

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain S

50S ribosomal protein L24