J3_6VYR_006

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGGA*UAC*GGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VYR|1|D|G|942
6VYR|1|D|U|943
6VYR|1|D|G|944
6VYR|1|D|G|945
6VYR|1|D|A|946
*
6VYR|1|D|U|1235
6VYR|1|D|A|1236
6VYR|1|D|C|1237
*
6VYR|1|D|G|1337
6VYR|1|D|G|1338
6VYR|1|D|A|1339
6VYR|1|D|A|1340
6VYR|1|D|U|1341

Current chains

Chain D

16S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain B

Transfer RNA; tRNA

Chain M

30S ribosomal protein S7

Chain O

30S ribosomal protein S9

Chain X

30S ribosomal protein S13