J3_6VYR_015

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6VYR|1|a|U|686, 6VYR|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYR_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0548

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6VYR|1|a|U|683
6VYR|1|a|G|684
6VYR|1|a|A|685
6VYR|1|a|U|686
6VYR|1|a|C|687
6VYR|1|a|U|688
6VYR|1|a|A|689
*
6VYR|1|a|U|773
6VYR|1|a|G|774
6VYR|1|a|G|775
*
6VYR|1|a|C|791
6VYR|1|a|A|792
6VYR|1|a|A|793
6VYR|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2

Chain m

50S ribosomal protein L34