J3_6VYR_017
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGGA*UUUAAAG*CACU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6VYR_017 not in the Motif Atlas
- Geometric match to J3_8VTW_042
- Geometric discrepancy: 0.3042
- The information below is about J3_8VTW_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46457.1
- Basepair signature
- cWW-F-F-F-F-cSS-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6VYR|1|a|A|1054
6VYR|1|a|G|1055
6VYR|1|a|G|1056
6VYR|1|a|A|1057
*
6VYR|1|a|U|1081
6VYR|1|a|U|1082
6VYR|1|a|U|1083
6VYR|1|a|A|1084
6VYR|1|a|A|1085
6VYR|1|a|A|1086
6VYR|1|a|G|1087
*
6VYR|1|a|C|1102
6VYR|1|a|A|1103
6VYR|1|a|C|1104
6VYR|1|a|U|1105
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L10
- Chain Y
- 50S ribosomal protein L11
- Chain q
- 50S ribosomal protein L36
Coloring options: