J3_6VYR_034

3D structure

PDB id

6VYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6VYR|1|a|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYR_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0459

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6VYR|1|a|G|297
6VYR|1|a|G|298
6VYR|1|a|A|299
6VYR|1|a|A|300
6VYR|1|a|G|301
*
6VYR|1|a|C|316
6VYR|1|a|G|317
6VYR|1|a|C|318
6VYR|1|a|G|319
6VYR|1|a|A|320
6VYR|1|a|U|321
6VYR|1|a|A|322
6VYR|1|a|C|323
6VYR|1|a|A|324
6VYR|1|a|G|325
*
6VYR|1|a|C|337
6VYR|1|a|G|338
6VYR|1|a|U|339
6VYR|1|a|A|340
6VYR|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4