J3_6VYS_020

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6VYS_020 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.0613

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6VYS|1|a|U|1344
6VYS|1|a|C|1345
6VYS|1|a|G|1346
6VYS|1|a|A|1347
6VYS|1|a|C|1348
6VYS|1|a|C|1349
*
6VYS|1|a|G|1382
6VYS|1|a|A|1383
6VYS|1|a|A|1384
6VYS|1|a|A|1385
*
6VYS|1|a|U|1402
6VYS|1|a|A|1403

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23